Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs60208975 chr4:3364530 A/G 0.000145 492 26.45 31.83 32.9 KM Plot
THCA rs60215428 chr7:32816145 T/A 9.83E-5 500 31.43 31.57 32.1 KM Plot
THCA rs60234091 chr9:16877233 G/A 0.000152 494 31.47 31.53 27.38 KM Plot
THCA rs60266249 chr2:29065869 C/CA 0.000137 503 38.87 30.93 31.68 KM Plot
THCA rs60412119 chr6:133210388 A/G 2.61E-5 495 31.5 34.08 18.3 KM Plot
THCA rs6062373 chr20:61480444 G/C 5.43E-5 496 31 33.87 37.48 KM Plot
THCA rs6062707 chr20:61478846 G/A 5.3E-5 496 31.03 33.7 37.48 KM Plot
THCA rs6062708 chr20:61479496 C/G 5.38E-5 495 31.03 33.7 37.48 KM Plot
THCA rs6062716 chr20:61486950 C/T 6.24E-5 494 30.82 33.78 37.48 KM Plot
THCA rs6062718 chr20:61493620 C/T 5.93E-5 492 31.02 33.78 37.48 KM Plot
THCA rs6063285 chr20:47217190 A/G 0 494 31.47 33.22 6.78 KM Plot
THCA rs6063286 chr20:47219488 A/G 0 503 6.78 32.1 31.6 KM Plot
THCA rs6063287 chr20:47221637 T/C 0 502 31.53 32.1 6.78 KM Plot
THCA rs6063288 chr20:47225245 G/A 0 502 31.6 32.07 6.78 KM Plot
THCA rs6063293 chr20:47233201 C/G 0 502 31.6 32.07 6.78 KM Plot